The PrFEcT website is being developed as an online, open-access protein function and verification database archiving high- and low-throughput data and associated bioinformatics analyses for targeted bacterial proteins.
GenExpDB - a searchable compendium of E. coli gene expression data, which has been manually curated and normalized to allow data-mining across the database.
GenoBase - a major resource of high-throughput data for the E. coli K-12 model cell and public repository for sequence information, proteome, transcription, and metabolome data.
Orthology - a database of Classes of Reciprocal Sequence Homologues (CRSHs) of homologous microbial proteins likely to have equivalent biochemical functions
PrFEcT Predict - a database of 3d structure models of proteins with corresponding quality assessment and protein function prediction according to PFP and ESG.
RegulonDB - the primary reference database with curated knowledge of the transcriptional regulatory network of E. coli K-12
Software for evaluating target nominations
Upcoming Event: 5th IECA Conference 2011
Sample output for potential nominated targets
Computationally generated candidate proteins currently being evaluated for high-throughput experimental testing.
Estimates the probability of involvement of all known E. coli transcription factors (TFs) in producing changes observed in mRNA profiling experiment
Provides users with a system to upload different kinds of experimental into databases for storage, sharing, and analysis.