/* Script: Configuration.js This is the main configuration file for javascript apps on PrFEcT. */ HOST = location.host+"/"; TOMCAT_HOST = location.host+"/jsp"; var config = { multisite: { url: { ASAP: "https://asap.ahabs.wisc.edu/asap/query_features.php?LocationID=WIS&GenomeID=MG1655&SequenceVersionID=42&ExpSetID=&submit_external_qfSubmit=submit&rnrowsPerPage=100&keyword=", coliBASE: "http://xbase.bham.ac.uk/colibase/search.pl?search=", CyberCell: "http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-bin/webglimpse.cgi?id=6&errors=0&maxfiles=200&maxlines=200&cache=yes&query=", EchoBASE: "http://www.york.ac.uk/res/thomas/Query_result.cfm?select=gene&Keywordz=", EcoCyc: "http://biocyc.org/ECOLI/substring-search?type=NIL&object=", EcoGene: "http://ecogene.org/ecoSearchProcess.php?searchType=gene&name=", EcoliGenomes: "http://genexpdb.ou.edu/ecoligenomes/index.php?query=", EcoliHub2: "http://www.ecolihub.org/AjaxSearch.jsp?searchString=", EcoliProteins: "http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?sub=keywordSearch&q=", EcoliWiki: "http://ecoliwiki.net/colipedia/index.php/Special:Search?search=", GenExpDB: "http://genexpdb.ou.edu/index.php?query=", GenoBase: "http://sal.cs.purdue.edu:8097/GB7/search/keyword_search.jsp?skind=key&fword=", GenProtEC: "http://genprotec.mbl.edu/result.php?search_field=All+Fields&field_value=", GIRC: "http://genome.bio.titech.ac.jp/cgi-bin/o157/search.pl?table=o157&keyword=", "JCVI CMR": "http://cmr.jcvi.org/cgi-bin/CMR/shared/AnnotationSearch.cgi?search_type=&match_type=&search_string=", "KEGG Genes": "http://www.genome.jp/dbget-bin/www_bfind_sub?mode=bfind&max_hit=1000&dbkey=kegg&keywords=", Microbes: "http://www.microbesonline.org/cgi-bin/keywordSearch.cgi?type=0&mapId=01100&term=1&locus=0&hit=0&disp=0&homolog=0&format=1&favorites=&byFavorites=1&taxTyping=Type+the+first+few+letters&taxId=224308&taxId=264462&taxId=-12&taxId=177439&taxId=207559&taxId=391774&taxId=882&taxId=891&taxId=83333&taxId=269799&taxId=243231&taxId=211586&keyword=", MRC: "http://www.mrc-lmb.cam.ac.uk/genomes/cgi/ec_tf/get-simple-domarch.pl?query=", NCBI: "http://www.ncbi.nlm.nih.gov/sites/gquery?term=", "NCBI COGs": "http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?txt=", Orthology: "http://sal.cs.purdue.edu:8180/multisite/orthology_search.php?txt=", "Pathway Commons": "http://www.pathwaycommons.org/pc/webservice.do?version=3.0&snapshot_id=GLOBAL_FILTER_SETTINGS&record_type=PATHWAY&format=html&cmd=get_by_keyword&q=", Patric: "http://patricbrc.org/portal/portal/patric/Taxon?cType=taxon&cId=561&query=", Pec: "http://www.shigen.nig.ac.jp/ecoli/pec/quickSearchAction.do?action=all&inputSearchWord=", PMTG: "http://www1.pasteur.fr/cgi-bin/pmtg/gene.pl?Gene=", RegulonDB: "http://regulondb.cs.purdue.edu/SearchListController?object_form=GN&key_id_org=ECK12&Submit=Go&object_id=", String: "http://string-db.org/newstring_cgi/show_network_section.pl?UserId=PYrU3NeXMX_h&sessionId=UIP42pa7TjZP&flash=10&identifier=", Uniprot: "http://www.uniprot.org/uniprot/?sort=score&query=" }, defaultSites: 41979310 }, workbench: { logos: { 'BioCyc.org': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_ecocyc.gif', 'ecoli.aist-nara.ac.jp': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_genobase.gif', 'regulondb.ccg.unam.mx': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_regulondb.gif', 'genexpdb.ou.edu': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_oubcf.gif', 'ecoliwiki.net': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_ecoliwiki.gif', 'ecogene.org': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_ecogene_small.png', 'sal.cs.purdue.edu:8097': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_genobase.gif', 'regulondb.cs.purdue.edu':'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_regulondb.gif', 'www.ncbi.nlm.nih.gov': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_ncbi.gif', 'dragon.bio.purdue.edu': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_ecolipredict.gif', 'www.ecolicommunity.org': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_ecoliLit.gif', 'www.ecolihub.org': 'http://'+TOMCAT_HOST+'/EcoliHub/images/icon_ecoliLit.gif' }, icons: { gene: 'http://'+HOST+'/workbench/images/icons/gene.png', pattern: 'http://'+HOST+'/workbench/images/icons/pattern.png', search: 'http://'+HOST+'/workbench/images/icons/mag.png', diff: 'http://'+HOST+'/workbench/images/icons/diff.png', cart_temp: 'http://'+HOST+'/workbench/images/icons/cart_temp.png', cart_saved: 'http://'+HOST+'/workbench/images/icons/cart_saved.png', search_temp: 'http://'+HOST+'/workbench/images/icons/search_temp.png', search_saved:'http://'+HOST+'/workbench/images/icons/search_saved.png' }, services: { keywordSearch: { url: 'http://'+TOMCAT_HOST+'/EcoliHub/keywordSearch.do', data:'output=xml&keyword=[SEARCH_TERM]' }, geneDetails: { url: 'http://'+TOMCAT_HOST+'/EcoliHub/geneDetails.do', data:'output=xml&namespace=[NAMESPACE]&namespace_id=[NAMESPACE_ID]&searchtype=[multiple]' }, proteinDetails: { url: 'http://'+TOMCAT_HOST+'/EcoliHub/proteinDetails.do', data:'output=xml&namespace=[NAMESPACE]&namespace_id=[NAMESPACE_ID]&searchtype=[multiple]' }, rangeSearch: { url: 'http://'+TOMCAT_HOST+'/EcoliHub/remoteBrowser.do', data:'output=xml&namespace=[NAMESPACE]&namespace_id=[NAMESPACE_ID]&rangevalue=[RANGE]' }, genomeBrowser: { url: 'http://'+TOMCAT_HOST+'/EcoliHub/remoteBrowser.do', data:'namespace=[NAMESPACE]&namespace_id=[NAMESPACE_ID]&rangevalue=[RANGE]&displayMode=genome_browser' }, whatsNewInDetails: { url: 'http://'+TOMCAT_HOST+'/WorkflowRest/WhatsNewGeneDetails', data:'database=[DATABASE]&namespace=[NAMESPACE]&namespace_id=[NAMESPACE_ID]&logged_date=[2006-01-01]&username=[Guest]&user_ip=[255.255.255.255]' }, whatsNewInIds: { url: 'http://'+TOMCAT_HOST+'/WorkflowRest/WhatsNewGeneIDs', data:'database=[DATABASE]&namespace=[NAMESPACE]&logged_date=[2006-01-01]&username=[Guest]&user_ip=[255.255.255.255]' }, whatsDiffInDetails: { url: 'http://'+TOMCAT_HOST+'/WorkflowRest/WhatsDifferentGeneDetails', data:'database1=[DATABASE1]&namespace1=[NAMESPACE1]&namespace_id1=[NAMESPACE_ID1]&database2=[DATABASE2]&namespace2=[NAMESPACE2]&namespace_id2=[NAMESPACE_ID2]' }, whatsDiffInIds: { url: 'http://'+TOMCAT_HOST+'/WorkflowRest/WhatsDifferentGeneIDs', data:'database1=[DATABASE1]&namespace1=[NAMESPACE1]&database2=[DATABASE2]&namespace2=[NAMESPACE2]' } } } } window.addEvent( 'domready', function( ){ if ( window.Hash && Hash.Storage ) window.settings = new Hash.Storage( 'settings' ); }); function remName(a, b){ if(a.value==b){ a.value=''; }else if(a.value==''){ a.value=b; }else{ a.value=a.value; } } function chkName(a, b){ if(a.value==''){ a.value=b; }else{ a.value=a.value; } }